贺超英

中国科学院植物研究所研究员

贺超英，男，博士，研究员，博士生导师。中国科学院植物研究所研究员、博导，中国科学院“百人计划”入选者。于1995年在西北师范大学获得理学学士学位；1998年中国林业科学院亚热带林业研究所获得农学硕士学位；2001年在中国科学院遗传研究所获得理学博士学位。2001年10月受邀到德国Max-Planck-Institute for Plant Breeding Research (Cologne) 植物分子遗传系从事博士后研究工作，并于2006年5月在该系成立功能进化研究组，受聘为研究组长；2008年1月以“百人计划”引进到中国科学院植物研究所系统与进化植物学国家重点实验室工作，成立了功能进化发育生物学创新研究组，任首席研究员。

简介

职称：研究员、博士生导师

出生地：甘肃庆阳县

出生年月：1973年1月

部门：系统与进化植物学国家重点实验室

课题组：功能进化发育生物学创新研究组

中国科学院植物研究所研究员、博导，中国科学院“百人计划”入选者。于1995年在西北师范大学获得理学学士学位；1998年中国林业科学院亚热带林业研究所获得农学硕士学位；2001年在中国科学院遗传研究所获得理学博士学位。2001年10月受邀到德国Max-Planck-Institute for Plant Breeding Research (Cologne) 植物分子遗传系从事博士后研究工作，并于2006年5月在该系成立功能进化研究组，受聘为研究组长；2008年1月以“百人计划”引进到中国科学院植物研究所系统与进化植物学国家重点实验室工作，成立了功能进化发育生物学创新研究组，任首席研究员。

研究方向

研究组主要从事功能进化发育生物学 (functional evo-devo) 和功能基因组学 (functional genomics) 方面的研究工作。研究兴趣主要涉及生物多样性与物种起源进化的分子机理和重要农（园）艺性状自然变异、驯化和作物设计（crop design）的分子基础。当前的主要研究内容包括：（1）植物花果多样性及进化机理和（2）农作物重要基因功能进化及其挖掘利用等方面研究。

1. 植物花果多样性和进化机理的研究

这部分工作以茄科植物为主要试材，旨在阐明一些全新花形态结构（floral morphological novelties）或进化创新结构（evolutionary innovations）起源的分子基础及其相关生物大分子互作网络、复合体和基因家族的功能进化，并揭示果实大小等自然变异遗传调控机制，最终理解物种形成和生物多样性的进化机制等科学问题。现拥有大量的茄科植物资源和Physalis floridana的突变体库，因此主要工作包括以反向遗传学的策略来揭示一些重要调控基因家族成员如MAD-box基因在茄科植物形态建成过程中作用和分子分析一些具有进化信息的酸浆突变体。主要内容有：全新花形态结构的功能进化和选择机制、浆果大小进化的分子机理和花果控制网络的功能进化（保守性和多样性）等研究。

2. 农作物重要基因功能进化及其挖掘利用研究

瞄准国家发展战略需求，紧密围绕重要农作物如大豆和水稻等的重要目标性状如抗逆性（包括生物胁迫和非生物胁迫）和产量控制等，通过结构基因组学、比较基因组学和功能基因组学的研究，旨在挖掘重要功能基因并探讨它们在转基因作物育种设计中的应用前景。主要研究工作包括相关基因的大规模克隆、分子分析和表达研究等，阐明重要转录因子和重要基因家族成员在这些作物中的演化模式及其与相应性状自然变异趋势的相关性研究，从而筛选具有重要育种价值的调控基因和功能基因并进行转基因功能验证分析，进而弄清楚它们作用的分子细节，为农作物新品种培育奠定基础。

研究论文

王永军, 东方阳, 王修强, 杨雅麟, 喻德跃, 盖钧镒, 吴晓雷, 贺超英, 张劲松, 陈受宜. (2004). 大豆5个花叶病毒株系抗性基因的定位. 遗传学报 31(1): 87-90

王永军，吴晓雷，贺超英，张劲松，陈受宜，盖钧镒. (2003). 大豆作图群体检验与调整后构建的遗传图谱. 中国农业科学 36(11): 1254-1260

贺超英, 王伟权, 东方阳, 张劲松, 盖钧镒, 陈受宜. (2001). 大豆1,5-二磷酸核酮糖羧化酶小亚基基因的转录表达分析. 科学通报 46(16): 1375-1380

贺超英, 陈益泰. (2002). 桤木种源苗期生长和固N能力的变异. 林业科学研究 15(6): 680-686

贺超英, 张志永, 王永军, 郑先武, 喻得跃, 陈受宜, 盖钧镒. (2001). 利用微卫星标记评估大豆重组近交系NJRIKY. 遗传学报 28(2): 171-181

贺超英, 陈受宜. (2001). 基因组学方法在植物抗逆性研究中的应用. 生物工程进展 21(1): 29-32

He CY, Wu XL, Zhang JS, Dongfang Y, Du BX, Zhang ZY, Chen SY (2001). Isolation and characterization of a new defense gene from soybean. Sci. in China 44(4): 409-420

贺超英, 吴晓雷, 东方阳, 张劲松, 杜保兴, 张志永, 陈受宜. (2001). 大豆中一个新防卫基因的克隆与鉴定. 中国科学C辑 31(3): 193-201

He CY, Zhang ZY, Chen SY (2001). Isolation and characterization of soybean resistance gene analogs. Chinese Sci. Bulletin 46(23): 1984-1988

贺超英, 张志永, 陈受宜. (2001). 大豆中NBS类抗病基因同源序列的分离与鉴定. 科学通报 46(12): 1017-1021

吴晓雷, 王永军, 贺超英(同等贡献), 陈受宜，盖钧镒, 王学臣. (2001). 大豆重要农艺性状的QTL分析. 遗传学报 28(10): 947-955

吴晓雷, 贺超英(同等贡献), 王永军, 张志永, 东方阳, 张劲松, 陈受宜, 盖钧镒. (2001). 大豆遗传图谱的构建和分析. 遗传学报 28(11): 1051-1061

吴晓雷, 贺超英, 陈受宜, 庄炳昌, 王克晶, 王学臣. (2001). 用SSR分子标记研究大豆属种间亲缘进化关系. 遗传学报 28(4): 359-366

吴晓雷, 贺超英, 陈受宜. (2001). 大豆属遗传多样性和进化关系. 自然科学进展 11(7): 689-698

Li QX, Li JG, Zhang L, Pan CC, Yang N, Sun K*, He CY*. 2021. Gibberellins are required for the dimorphic flower development in Viola philippica. Plant Sci., 303: 110749.

Gao HH, Li J, Wang L, Zhang JS, He CY*. 2020. Transcriptomic variation of the flower-fruit transition in Physalis and Solanum. Planta, 252: 28.

Wang Y, Gao HH, He LL, Zhu WW, Yan LX, Chen QS, He CY*. 2019. The PHOSPHATE1 genes participate in salt and Pi signaling pathways and play adaptive roles during soybean evolution. BMC Plant Biol., 19: 353.

Li J, Song CJ, He CY*. 2019. Chinese lantern in Physalis is an advantageous morphological novelty and improves plant fitness. Sci. Rep., 9: 596.

贺超英*，王丽，严立新，李巧茹，雍斌，朱韦韦. 2019. 果实起源与多样化的进化发育机制. 中国科学: 生命科学, 49: 301-319.

Gao HH, Wang Y, Li W, Gu YZ, Lai YC, Bi YD, He CY*. 2018. Transcriptomic comparison reveals genetic variation potentially underlying seed developmental evolution of soybeans. J. Exp. Bot., 69: 5089-5104.

Hao ZZ, Gong PC, He CY*, Lin JX*. 2018. Peptide aptamers to inhibit protein function in plants. Trends Plant Sci., 23: 281-284.

Gong PC, Li J, He CY*. 2018. Exon junction complex (EJC) core genes play multiple developmental roles in Physalis floridana. Plant Mol. Biol., 98: 545-563.

Gu YZ, Li W, Jiang HW, Wang Y, Gao HH, Lai YC, Chen QS, He CY*. 2017. Differential expression of a WRKY gene between wild and cultivated soybeans correlates to seed size. Journal of Experimental Botany 68(11): 2717-2729.

Gong PC, Ao X, Liu GX, Cheng F-Y*, He CY*. 2017. Duplication and whorl-specific downregulation of the obligate AP3-PI heterodimer genes explain the origin of Paeonia lactiflora plants with spontaneous corolla mutation. Plant Cell Physiol. 58(3): 411-425.

Li QX, Huo QD, Wang J, Zhao J, Sun K*, He CY*. 2016. Expression of B-class MADS-box genes in response to variations in photoperiod is associated with chasmogamous and cleistogamous flower development in Viola philippica. BMC Plant Biol. 16: 151.

Wang Y, Gu YZ, Gao HH, Qiu LJ, Chang RZ, Chen SY, He CY*. 2016. Molecular and geographic evolutionary support for the essential role of GIGANTEAa in soybean domestication of flowering time. BMC Evol. Biol. 16: 79.

Gu YZ, Xing SL, He CY*. 2016. Genome-wide analysis indicates lineage-specific gene loss during Papilionoideae evolution. Genome Biol. Evol. 8(3): 635-648.

Zhao M, Gu YZ, He LL, Chen QS, He CY*. 2015. Sequence and expression variations suggest an adaptive role for the DA1-like gene family in the evolution of soybeans. BMC Plant Biol. 15: 120.

Zhou H, Cheng F-Y*, Wu J, He CY* .2015. Isolation and functional analysis of Flowering Locus T gene in tree peonies (PsFT). J. Amer. Soc. Hort. Sci. 140(3): 265-271.

Wang L, Li J, Zhao J, He CY* .2015. Evolutionary developmental genetics of fruit morphological variation within the Solanaceae. Front. Plant Sci. 6: 248.

Li ZC, He CY* .2015. Physalis floridana Cell Number Regulator1 encodes a cell membrane-anchored modulator of cell cycle and negatively controls fruit size. J. Exp. Bot. 66(1): 257-270.

Zhang SH, Zhang JS, Zhao J, He CY* .2015. Distinct subfunctionalization and neofunctionalization of the B-class MADS-box genes in Physalis floridana. Planta 241: 387-402.

Gong PC, Quan H, He CY* .2014. Targeting MAGO proteins with a peptide aptamer reinforces their essential roles in multiple rice developmental pathways. Plant J. 80: 905-914.

Wang L, He LL, Li J, Zhao J, Li ZC, He CY*. 2014. Regulatory change at Physalis Organ Size 1 locus correlates to natural variation in tomatillo reproductive organ size. Nat. Commun. 5: 4271.

Gong PC, He CY*. 2014. Uncovering divergence of rice EJC core heterodimer gene duplication reveals their essential role in growth, development and reproduction. Plant Physiol. 165(3): 1047-1061.

Zhao M, He LL, Gu YZ, Wang Y, Chen QS, He CY*. 2014. Genome-wide analyses of a plant-specific LIM-domain gene family implicate its evolutionary roles in plant diversification. Genome Biol. Evol. 6 (4): 1000-1012.

Zhang JS, Li ZC, Zhao J, Zhang SH, Quan H, Zhao M, He CY*. 2014. Deciphering the Physalis floridana double-layered-lantern1 mutant provides insights into functional divergence of the GLOBOSA duplicates within the Solanaceae. Plant Physiol. 164 (2): 748-764.

Zhang JS, Zhao J, Zhang SH, He CY* .2014. Efficient gene silencing mediated by tobacco rattle virus in an emerging model plant Physalis. PLoS ONE 9(1): e85534

Gong PC, Zhao M, He CY*. 2014. Slow co-evolution of the MAGO and Y14 protein families is required for the maintenance of their obligate heterodimerization mode. PLoS ONE 9(1): e84842.

Zhao J, Tian Y, Zhang JS, Zhao M, Gong PC, Riss S, Saedler R, He CY*. 2013. The euAP1 protein MPF3 represses MPF2 to specify floral calyx identity and displays crucial roles in ‘Chinese lantern’ development in Physalis. Plant Cell 25(6): 2002-2021.

He LL, Zhao M, Wang Y, Gai JY, He CY*. 2013. Phylogeny, structural evolution and functional diversification of the plant PHOSPHATE1 gene family: a focus on Glycine max. BMC Evol. Biol. 13: 103.

Zhou H, Cheng F-Y*, Wang R, Zhong Y, He CY*. 2013. Transcriptome comparison reveals key candidate genes responsible for the unusual reblooming trait in tree peonies. PLoS ONE 8(11): e79996.

Wang L, Li ZC, He CY*. 2012. Transcriptome-wide mining of the differentially expressed transcripts for natural variation of floral organ size in Physalis philadelphica. J. Exp. Bot. 63(18): 6457-6465.

Zhang JS, Khan MR, Tian Y, Li ZC, Simone R, He CY*. 2012. Divergences of MPF2-like MADS-domain proteins have an association with the evolution of the inflated calyx syndrome within Solanaceae. Planta 236 (4): 1247-1260.

Khan MR*, Hu J, He CY*. 2012. Plant hormones including ethylene are recruited in calyx inflation in Solanaceous plants. J. Plant Physiol. 169(10): 940-948.

He LL, Zhao J, Zhao M, He CY*. 2011. Current development and application of soybean genomics. Front. Biol. 6(4): 337-348.

Zhang JS, Tian Y, Wang L, He CY*. 2010. Functional evolutionary developmental biology (evo-devo) of morphological novelties in plants. J. Syst. Evol. 48 (2): 94-101.

Wunder J, He CY, Hu J, Li M, Varotto C, Saedler H*. 2010. Evolution of plant biodiversity. Acta Hort. 849: 21-32.

He CY*, Tian Y, Saedler R, Efremova N, Riss S, Khan MR, Yephremov A, Saedler H. 2010. The MADS-domain protein MPF1 of Physalis floridana controls plant architecture, seed development and flowering time. Planta 231: 767-777.

Khan MR, Hu J, Riss S, He CY, Saedler H*. 2009. MPF2-like-A MADS-box genes control the inflated calyx syndrome in Withania (Solanaceae): roles of Darwinian’s selection. Mol. Biol. Evol. 26(11): 2463-2473.

He CY*, Sommer H, Grosardt B, Huijser P, Saedler H*. 2007. PFMAGO, a MAGO NASHI-like factor, interacts with the MADS-box protein MPF2 from Physalis floridana. Mol. Biol. Evol. 24(5): 1229-1241.

He CY, Saedler H*. 2007. Hormonal control of the inflated calyx syndrome, a morphological novelty, in Physalis. Plant J. 49(5): 935-946.

He CY*, Saedler H. 2007. Molecular evolution of a morphological novelty in Solanaceae, the Inflated-Calyx-Syndrome (ICS) in Physalis. Acta Hort. 745: 171-182.

He CY, Saedler H*. 2005. Heterotopic expression of MPF2 is the key to the evolution of the Chinese lantern of Physalis, a morphological novelty in Solanaceae. Proc. Natl. Acad. Sci. USA 102 (16): 5779-5784.

He CY, Münster T, Saedler H*. 2004. On the origin of floral morphological novelties. FEBS Lett. 567: 147-151.

Wang BJ, Wang YJ, Wang Q, Luo GZ, Zhang ZG, He CY, He SJ, Zhang JS, Gai JY, Chen SY*. 2004. Characterization of an NBS-LRR resistance gene homologue from soybean. J. Plant Physiol. 161(7): 815-822.

Zhang WK, Wang YJ, Luo GZ, Zhang JS, He CY, Wu XL, Gai JY, Chen SY*. 2004. QTL mapping of ten agronomic traits on the soybean (Glycine max L. Merr.) genetic map and their association with EST markers. Theor. Appl. Genet. 108: 1131-1139.

Wang BJ, Zhang ZG, Li XG, Wang YJ, He CY, Zhang JS, Chen SY*. 2003. Cloning and analysis of a disease resistance gene homolog from soybean. Act. Bot. Sin. 45(7): 864-870.

He CY, Tian AG, Zhang JS, Zhang ZY, Gai JY, Chen SY*. 2003. Isolation and characterization of a full-length resistance gene homolog from soybean. Theor. Appl. Genet. 106: 786-793.

He CY, Zhang JS, Chen SY*. 2002. A soybean gene encoding a proline-rich protein is regulated by salicylic acid, an endogenous circadian rhythm and by various stresses. Theor. Appl. Genet. 104: 1125-1131.

He CY, Wang WQ, Dongfang Y, Zhang JS, Chen SY*. 2002. Transcritption regulation of soybean ribulose-1, 5-bisphosphate carboxylase small subunit gene by external factors. Chinese Sci. Bulletin 47(1): 37-43.

He CY, Wu XL, Zhang JS, Gai JY, Chen SY*. 2001. Isolation and characterization of a mitochondrial atp6 gene from soybean [Glycine max (L) Merr]. Act. Bot. Sin. 43(1): 51-58.

He CY, Wu XL, Zhang JS, Dongfang Y, Du BX, Zhang ZY, Chen SY*. 2001. Isolation and characterization of a new defense gene from soybean. Sci. in China (C) 44(4): 409-420.

He CY, Zhang ZY, Chen SY*. 2001. Isolation and characterization of soybean NBS analogs. Chinese Sci. Bulletin 46(23): 1984-1988.

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